PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G11830.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 164aa    MW: 18828.5 Da    PI: 4.5714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G11830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.92.1e-1042106168
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                      +fY++YA++ GF ++k++s++ ++++ +   t+ Cs++gk++ ++k+   + +++++ r++   + ++
  OGLUM01G11830.1  42 DFYKKYARKKGFAITKRSSRTGQDENIVQYFTLACSRQGKAQYSSKN---TLKPNPSIRMDSSSEAVI 106
                      6*********************9999999***************999...444555555444444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MEDDFHIEEM EEESEDQATE GDVELAEPKK GMVFDSLDDA FDFYKKYARK KGFAITKRSS  60
RTGQDENIVQ YFTLACSRQG KAQYSSKNTL KPNPSIRMDS SSEAVIKPKQ TCTQPYTGSK  120
NRASPFEEER SKGRPSRTEN ESNEENRIDE QNWSKEESGI DEKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.12e-08FAR1 family protein