PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G12520.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 318aa    MW: 34876.2 Da    PI: 10.4357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G12520.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-174994147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  OGLUM01G12520.1 49 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 94
                     899*****************************.***********996 PP
2Myb_DNA-binding57.72.8e-18101145147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l  a++ +G++ W++Iar ++ gRt++ +k++w+ +
  OGLUM01G12520.1 101 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 145
                      678*******************.*********.***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MAHEMMGGFF GHPPPPPATA AVGEEEEEVV EETEEGGHGG GVHGKLCARG HWRPAEDAKL  60
KDLVAQYGPQ NWNLIAEKLD GRSGKSCRLR WFNQLDPRIN RRAFTEEEEE RLMAAHRAYG  120
NKWALIARLF PGRTDNAVKN HWHVLMARRH REQSGAFRRR KPSSSSASPA PAPPPPPPQP  180
VVALHHHHHR YSQQYSGYSG AAESDESAST CTTDLSLSSG SAAAAAAAAA ANIPCCFYQS  240
TPRASSSSTA ACRAPRVAAA ADTVAFFPGR KEGSSQDQAI KTKLRLELAK NKTRTRRRRR  300
NKTCSKLING MKNNKKKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-72MYB family protein