PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G13480.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26257.2 Da    PI: 10.8604
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G13480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.4e-151250442
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       +s r  tf kRr g++KKA EL  LC++ v+v+++++
  OGLUM01G13480.1 12 AKDSTRRLTFKKRRRGLIKKAGELASLCGIGVCVVVYGE 50
                     56788999*****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MARNRIILKK VAKDSTRRLT FKKRRRGLIK KAGELASLCG IGVCVVVYGE GEVKPEVWPS  60
APEARAILSR FNSAPNIDRF KRVTNQEQYL RKRIAKARER TSKAGDGNRE RDATIMLYEA  120
ATGKRPVADL NVQELTNLGL VINERINHLK ERIERLGGAA LMAPPPSTQP AEASSSLPPL  180
VPYANGAGME GNKRMKVSMH QKGWFINMST MTGDAGTSAD VEGNTGVGTS ARGDMMHLSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.15e-24M-type_MADS family protein