PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G13750.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 411aa MW: 43814.5 Da PI: 7.161

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G13750.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	209	251	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + E++RR r+ ++++ L l+P++ +K + a++ A+eYI++L OGLUM01G13750.1 209 KKEKQRRLRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 251 57*******************9.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MPATSLSLSL VQASEKARQQ PSARKMYHPQ CELLMPLESL EMDVGQSHLA AAVAAAMPGE 60 LNFHLLHSLD AAAAAASSTA ASASSQPTVD YFFGGADQQP PPPPAVQYDQ LAAPHHHQTV 120 AMLRDYYGGH YPPAAAAAAA TEAYFRGGPR TAGSSSLVFG PADDESAFMV GPFESSPTPR 180 SGGGGGGGRK RSRATAGFHG GGPANGVEKK EKQRRLRLTE KYNALMLLIP NRTKEDRATV 240 ISDAIEYIQE LGRTVEELTL LVEKKRRRRE MQGDVVDAAP SSVVAGMDQA AESSEGEVMA 300 AAAAAAMGAV APPPRQAPIR STYIQRRSKE TFVDVRIVED DVNIKLTKRR RDGCLAAASR 360 ALDDLRLDLV HLSGGKIGDC HIYMFNTKIH PGSPVFASAV ASRLIEVVDE Y

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MPATSLSLSL VQASEKARQQ PSARKMYHPQ CELLMPLESL EMDVGQSHLA AAVAAAMPGE  60
LNFHLLHSLD AAAAAASSTA ASASSQPTVD YFFGGADQQP PPPPAVQYDQ LAAPHHHQTV  120
AMLRDYYGGH YPPAAAAAAA TEAYFRGGPR TAGSSSLVFG PADDESAFMV GPFESSPTPR  180
SGGGGGGGRK RSRATAGFHG GGPANGVEKK EKQRRLRLTE KYNALMLLIP NRTKEDRATV  240
ISDAIEYIQE LGRTVEELTL LVEKKRRRRE MQGDVVDAAP SSVVAGMDQA AESSEGEVMA  300
AAAAAAMGAV APPPRQAPIR STYIQRRSKE TFVDVRIVED DVNIKLTKRR RDGCLAAASR  360
ALDDLRLDLV HLSGGKIGDC HIYMFNTKIH PGSPVFASAV ASRLIEVVDE Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	194	GRKRSRA
2	264	269	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	2e-32	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G13750.1