PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G14390.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 320aa MW: 33884.4 Da PI: 5.4688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G14390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l++++++ G g W++ ++ g+ R++k+c++rw +yl OGLUM01G14390.1 14 RGRWTKEEDEKLARYIRENGEGAWRSMPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	51.2	2.9e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l OGLUM01G14390.1 67 RGNISPQEEDIILNLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SPQEEDIILN LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKGYEFL 120 RGGGGGGGAV VNVDLSKLPG GGKRRGGRTG RSSSGKEKTR TKEKDKAPAP EAAHNDDDGG 180 GGGGGGIDNV SAASHSHREE QAQASASGLT SDGLEEGPLG LSEEMVSGPV GPVSPKPEVG 240 QDGSSAESGC CGPSGPSGPT EAVGQDMGDK SMDWDLVGLD DGFANDDMWG SLSWDYGELV 300 GPDGVHQGEV LSDLFFLGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	4e-70	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G14390.1