PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G16410.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 444aa MW: 49096.4 Da PI: 4.6721

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G16410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	84.5	1.2e-26	21	122	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw ++ ie ++df +h +P+ar+kki+ +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+av++t+ +df OGLUM01G16410.1 21 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKLCELFVQELAVRAWACAQSHNRCIILDTDIAEAVASTESYDF 114 688997655669****************************************************************************** PP NF-YC 92 lvdivprd 99 lvdi ++ OGLUM01G16410.1 115 LVDILHNH 122 *98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MEQTLDVHRS LRPPMPMAQQ QMDEFWRDRQ KEIEMTKDFS EHMIPMARLK KIVSSQKGNM 60 MMTFDMPAFL SKLCELFVQE LAVRAWACAQ SHNRCIILDT DIAEAVASTE SYDFLVDILH 120 NHSVKQKSTP CSSTKRCRLV DQPSASHIPH QHLLPQFAPT YTLAIPITPS LMPLISQCTP 180 SSFPSLPQEK FPFMAPTPIV NRSMLFIDNI ARGLGLQGNN INAVANNNIL DNIVGCSSPA 240 VLASMMNPAL LGPSGAPLNP PNSQSYNCTM DIINSNDACG SSNSSVIVAN QANIAPSGHF 300 YPIALQSSCS TFLHSNNNDT ITAIPEGVDI SDIMHVTSDV DAATKVFSGQ EEQHEKETNV 360 EWHHQNEIYE SIDIEIINAT TRDGNKCSIS WDELGMADDS LLDNFLEELQ VRKDDVSDTR 420 IAFNKDPFLD DAVLSNPSTS NGNK

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MEQTLDVHRS LRPPMPMAQQ QMDEFWRDRQ KEIEMTKDFS EHMIPMARLK KIVSSQKGNM  60
MMTFDMPAFL SKLCELFVQE LAVRAWACAQ SHNRCIILDT DIAEAVASTE SYDFLVDILH  120
NHSVKQKSTP CSSTKRCRLV DQPSASHIPH QHLLPQFAPT YTLAIPITPS LMPLISQCTP  180
SSFPSLPQEK FPFMAPTPIV NRSMLFIDNI ARGLGLQGNN INAVANNNIL DNIVGCSSPA  240
VLASMMNPAL LGPSGAPLNP PNSQSYNCTM DIINSNDACG SSNSSVIVAN QANIAPSGHF  300
YPIALQSSCS TFLHSNNNDT ITAIPEGVDI SDIMHVTSDV DAATKVFSGQ EEQHEKETNV  360
EWHHQNEIYE SIDIEIINAT TRDGNKCSIS WDELGMADDS LLDNFLEELQ VRKDDVSDTR  420
IAFNKDPFLD DAVLSNPSTS NGNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-25	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G16410.1