PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G18360.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 699aa    MW: 75725.3 Da    PI: 6.6117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G18360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24125226199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++       ++++ +   +  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  ++
  OGLUM01G18360.1 125 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM--RD 214
                      89*********************999****987656666..5************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++ +v+++r+
  OGLUM01G18360.1 215 EGGNIHVGLRRA 226
                      99*******996 PP
2Auxin_resp118.64.9e-39280363183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa++a+t+++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+
  OGLUM01G18360.1 280 AATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 363
                      78999*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    
MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS  60
ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP  120
RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI  180
YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL  240
SSMPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST  300
PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR  360
LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT  420
GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML  480
YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF  540
GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG  600
NNISRASEYE LNPGQCKVFV ESEAVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV  660
YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein