PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G21120.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 251aa    MW: 26537.3 Da    PI: 8.2894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G21120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-06106149754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er RR+ +   ++eL  llP++     ++ s   i+e+A+ ++ +L
  OGLUM01G21120.1 106 VSERARRQTMSRLYAELGALLPNL----PPRASTTRIVEEAIACVGEL 149
                      67*********************6....389**********9887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MDTSNCRPGL ERLRCSATNN CPQVHNRKAD TIAPSVLQPQ HKEQSFVPSR DDKITAPSEI  60
VDLAFGALFL ERVPMAEEDN LALSVVCERS PGTAAEAASG RPPKAVSERA RRQTMSRLYA  120
ELGALLPNLP PRASTTRIVE EAIACVGELR AKTAELEAYS AVAAAAGRAA RDGAAEVVAS  180
GKTSCFAVRL RAARARPGSL TRVLEVFQRH GVAVLAATVA RDGEETAVTV TTAAVAPRVL  240
ETIKAEIICA A