PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23720.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 381aa    MW: 41680.4 Da    PI: 5.7932
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.5e-32731672103
                      HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d++++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  OGLUM01G23720.1  73 FVAKTYEMVADAATDAVVSWGpgGSGASFVVWDPHALAAAVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKHL 157
                      9********************655679*****************************************99.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  OGLUM01G23720.1 158 LKNIKRRRVS 167
                      ******9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MASSSSSSLC RLLIPRPTTR RFSAGGGEGG MAAAAVKREV KPEAGEGWGG GDLGVVVPPR  60
PMEGLGEAGP APFVAKTYEM VADAATDAVV SWGPGGSGAS FVVWDPHALA AAVLPRFFKH  120
ANFSSFVRQL NTYGFRKVTP DRWEFANEAF LAGQKHLLKN IKRRRVSKPL MDSQLRNKTS  180
VVFGQPEAPG EVVSLKRDRA ALRAEVIMLK QQYNACKSQL IAMEEMVRNI ERRQQQTISL  240
FAKVLTNPVF VQQVLLNYVN KNGLRGAAKR QRLMENEEQH ADSPLNKGME AASVMEADVS  300
PGSTGCGTVG KVETTPMCNS QNIENMCDDV WEELDALPET GMEQEDKAGI DSFDVEEFVG  360
RPCGWVDDCP YLVEPMQFVE H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164LKNIKRR
2162166KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-75HSF family protein