PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23770.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 534aa MW: 56948.4 Da PI: 7.8703

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H OGLUM01G23770.1 95 FVCEICGKGFQRDQNLQLHRRGH 117 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MFHHHLQQQQ QQEEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPPSSGNN 60 GNNSNKRKRS LPGNPDPEAE VVALSPATLM ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP 120 WKLKQRGSKE AVRKKVYICP EASCVHHDPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK 180 YAVHSDWKAH SKICGTREYK CDCGTIFSRR DSFITHRAFC DALTEESAKA IGGIPAAMAA 240 PGHHHHHHHH HHHQLLFSPP PVMAHHQELA ALQEQQQQQH HQDVMQSPHQ HQQQQLVQQN 300 CGYAVKPEMA PWPTTMPYDH HHPLLQPLCN ANAAATAQSS ATSAPPTTPQ LPAAAAAAHL 360 SATALLQKAA QMGATIGGAG TGAAGAHYAH MASPAGAGAP AGGSATFGLG LSCLNTHQDG 420 GGGGGNGLIP AGMMGHLART ASHGRSGEDV AGAGGGGGDG MTRDFLGLRA FSHRDILLAG 480 FDSSCMGHVN AAAGMAGYEP PPPHHGQPQH QHQQQQQQQQ GGSNEPWHGM GSHS

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MFHHHLQQQQ QQEEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPPSSGNN  60
GNNSNKRKRS LPGNPDPEAE VVALSPATLM ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP  120
WKLKQRGSKE AVRKKVYICP EASCVHHDPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK  180
YAVHSDWKAH SKICGTREYK CDCGTIFSRR DSFITHRAFC DALTEESAKA IGGIPAAMAA  240
PGHHHHHHHH HHHQLLFSPP PVMAHHQELA ALQEQQQQQH HQDVMQSPHQ HQQQQLVQQN  300
CGYAVKPEMA PWPTTMPYDH HHPLLQPLCN ANAAATAQSS ATSAPPTTPQ LPAAAAAAHL  360
SATALLQKAA QMGATIGGAG TGAAGAHYAH MASPAGAGAP AGGSATFGLG LSCLNTHQDG  420
GGGGGNGLIP AGMMGHLART ASHGRSGEDV AGAGGGGGDG MTRDFLGLRA FSHRDILLAG  480
FDSSCMGHVN AAAGMAGYEP PPPHHGQPQH QHQQQQQQQQ GGSNEPWHGM GSHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	135	KLKQRGSKEAVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	6e-89	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G23770.1