PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23830.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 128aa    MW: 13724.6 Da    PI: 7.0265
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.71.1e-34111131100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l+ l+a+ +++  r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++k
  OGLUM01G23830.1  11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILRRLEAAGPDTvtRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASVK 104
                      7*********9***************************************555446************************************** PP

           DUF260  92 aelallkee 100
                      ae+a+++++
  OGLUM01G23830.1 105 AEIAAIRQK 113
                      ****99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILRRLEAA  60
GPDTVTRRAT MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP  120
PPALEDGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-18LBD family protein