PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 454aa MW: 46851.6 Da PI: 5.2213

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	267	312	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L A +Y+ksL+ OGLUM01G23890.1 267 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 312 7789*******************9.....699*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFNELMAG 60 GSSGDTRMVA IDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD 120 AAAALAMSTL AVPHPYPPPV AHGMFASGAG GSGGGGAVDD HEDAIMRAMM AVISSATASP 180 SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQQPRGGNG GHVVVKSSSS SGGLAVPMDQ 240 KPGGGGLGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV 300 LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAADAAM RARRAQQRAK VQISKAADSQ 360 SQQLVNLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI 420 MGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFNELMAG  60
GSSGDTRMVA IDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD  120
AAAALAMSTL AVPHPYPPPV AHGMFASGAG GSGGGGAVDD HEDAIMRAMM AVISSATASP  180
SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQQPRGGNG GHVVVKSSSS SGGLAVPMDQ  240
KPGGGGLGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV  300
LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAADAAM RARRAQQRAK VQISKAADSQ  360
SQQLVNLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI  420
MGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	276	ERKRRE
2	272	277	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-21	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G23890.1