PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G24040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 178aa MW: 19723 Da PI: 10.2656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G24040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.3e-09	10	48	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C.......... CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as........k 32 ++h + ErrRR+++N+ f L++l+P+ + OGLUM01G24040.1 10 KNHVMSERRRREKLNEMFLILKSLVPSiDKelerrvqeL 48 5899**********************9775555555553 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MNRAAGSSIK NHVMSERRRR EKLNEMFLIL KSLVPSIDKE LERRVQELES GKKVSRPPKR 60 KPCSETIIGG GGGSGAGAVK EHHHWVLSES QEGTPSDVRV IIMDKDELHL EVHCRWKELM 120 MTRLFDAIKS LRLDILSVQS SVPDGLLGLK IRAKYASSAA VAPAMISETL RTAVAAKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	21	ERRRRE
2	17	22	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	5e-17	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G24040.1