PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G25620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 303aa    MW: 31348.8 Da    PI: 7.6357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G25620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ +  +lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  OGLUM01G25620.1 137 PWSEEEHRLFLVGLDKLGKGDWRGISRSYVTTRTPTQVASHAQKF 181
                      8******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MARKCSHCGN YGHNSRTCSS SSASAGHRDT TMLCDGGGGG DGGGGLRLFG VQVHVAAGGG  60
GGGGGGGGLS MKKSYSMDCL QLAAAGAAPG SLVSPSSSSS SSMLLSIDEG GLERASNGYL  120
SDGPHGRIVQ ERKKGVPWSE EEHRLFLVGL DKLGKGDWRG ISRSYVTTRT PTQVASHAQK  180
FFLRQSSIGK KKRRSSLFDM MPICENGARV SEQLSGEGAA AAAASTSLSL MNTHESSSDR  240
VAAIDLNSTE EDDTVGASGR PFFPVVLMEQ QQQASHGHGH HHHCTPLDLE LGMSVSSTPS  300
IGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-43MYB_related family protein