PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G26700.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 107aa    MW: 11887.3 Da    PI: 6.516
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G26700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.8e-1162100444
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +T+eE+++  + +++ G++ W++Ia +++ gRt++++  +w
  OGLUM01G26700.1  62 FTEEEEDIVFRMHRLVGNR-WELIAGRIP-GRTAEEVEKFW 100
                      9******************.*********.*******9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    
MESSSGSQLG KNSKTSDGRE TKATSSLLLL ITAIHFVALC PKGENEGAGK EVNSTTQNFV  60
HFTEEEEDIV FRMHRLVGNR WELIAGRIPG RTAEEVEKFW AIKHQAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.12e-22MYB_related family protein