PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G27120.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 339aa    MW: 36862.7 Da    PI: 6.691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G27120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87e-33271182102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll 
  OGLUM01G27120.1  27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLP 111
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k+
  OGLUM01G27120.1 112 RIVRRKK 118
                      ****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA  60
FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE SFLRGQTHLL PRIVRRKKRG  120
EGGGGGGGAS CSFGGGAGEH QVAAAAASVG MSGEEEDAAE DVLAKEAALF EEVQRLRHEQ  180
TAIGEELARM SQRLQATERR PDQLMSFLAK LADDPNAVTG HLLEQAAERK RRRQHLPSHE  240
PTVCPLPPAP PPQPPQPLLA LAGAAAMDGT YWWTTEHHHH HHHQMKPMTV LPSLEPPTAS  300
CGVHQVPELG GGGVMGLTTD GEAKVEPPFP FCLLGQAFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229233RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-57HSF family protein