PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G27670.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 117aa    MW: 12897 Da    PI: 9.1011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G27670.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-091965346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT++  +++ +a + + ++   +W+ +ar+mg  +++++++ ++  
  OGLUM01G27670.1 19 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGAKSAEEVRRHYER 65
                     7********************************999********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MASSSKASSS SSASAASSEW TKQQNKQFER ALAVYDTDAP DRWHNVARYM GGAKSAEEVR  60
RHYERLQADV EQIEAGGVPS EVYRPETRRS ARQSNARDAG RNTCMSQLTN AHGGITF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-24MYB_related family protein