PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G27700.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 232aa    MW: 25399.4 Da    PI: 8.791
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G27700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.57.5e-293788358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     ++rY+eCl+NhAa+ Ggh+vDGCgEfmp+    +t + l CaACgCHR+FHRr+++
  OGLUM01G27700.1 37 RCRYHECLRNHAAASGGHVVDGCGEFMPA----STEEPLACAACGCHRSFHRRDPS 88
                     79**************************9....5668****************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MELSEHEEDA GDVGGGCSSP PTPPHRVLTS AAPETIRCRY HECLRNHAAA SGGHVVDGCG  60
EFMPASTEEP LACAACGCHR SFHRRDPSPG RAGAARLLQL HLPASINSRA PPALLLPPAA  120
AASKQGLPFP GYGTPSGGTG TTTASSSDER LRPSPVQPRR RSRTTFTREQ KEQMLAFAER  180
VGWRIQRQEE ATVEHFCAQV GVRRQALKVW MHNNKHSFKQ KQQQENRQEQ QQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-40ZF-HD family protein