PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G29670.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 555aa MW: 57144 Da PI: 7.8833

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G29670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.9	1.3e-16	67	127	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ OGLUM01G29670.1 67 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 127 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.1	1.2e-35	66	128	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k OGLUM01G29670.1 66 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 128 579**********************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE 60 ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQEYGQVG DANVFYWFQN 120 RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAHREAVAPS FTPPPPILPA PQPVQPQQQL 180 VSPVAAPTSS SSSSSDRSSG SSKPARATST QAMSVTAAMD LLSPLAAACH QQMLYQGQPL 240 ESPPAPAPKV HGIVPHDEPV FLQWPQSPCL SAVDLGAAIL GGQYMHLPVP APQPPSSPGA 300 AGMFWGLCND VQGPNNTGHK SCAWSAGLGQ HWCGSADQLG LGKSSAASIA TMSRPEEAHD 360 VDATKHGLLQ YGFGITTPAV HVDVTSSAAG VLPPVPSSPS PPNAAVTVAS VAATASLTDF 420 AASAISAGAV ANNQFQGPNP NQPFSNKGPV PRHGNDNKTS LADFGLVAGA CSGAGAAAAA 480 APEAGSSVAA VVCVSVAGAA PPLFYPAAHF NVRHYGDEAE LLRYRGGSRT EPVPVDESGV 540 TVEPLQQGAV YIVVM

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE  60
ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQEYGQVG DANVFYWFQN  120
RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAHREAVAPS FTPPPPILPA PQPVQPQQQL  180
VSPVAAPTSS SSSSSDRSSG SSKPARATST QAMSVTAAMD LLSPLAAACH QQMLYQGQPL  240
ESPPAPAPKV HGIVPHDEPV FLQWPQSPCL SAVDLGAAIL GGQYMHLPVP APQPPSSPGA  300
AGMFWGLCND VQGPNNTGHK SCAWSAGLGQ HWCGSADQLG LGKSSAASIA TMSRPEEAHD  360
VDATKHGLLQ YGFGITTPAV HVDVTSSAAG VLPPVPSSPS PPNAAVTVAS VAATASLTDF  420
AASAISAGAV ANNQFQGPNP NQPFSNKGPV PRHGNDNKTS LADFGLVAGA CSGAGAAAAA  480
APEAGSSVAA VVCVSVAGAA PPLFYPAAHF NVRHYGDEAE LLRYRGGSRT EPVPVDESGV  540
TVEPLQQGAV YIVVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-43	WOX family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G29670.1