PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G29850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 726aa    MW: 79769.8 Da    PI: 7.154
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G29850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24147248199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F   + +
  OGLUM01G29850.1 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFL--RGE 237
                      99****************************9966654.569************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  OGLUM01G29850.1 238 DGELRLGVRRA 248
                      999*****996 PP
2Auxin_resp108.38.4e-36273353182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha++ ks+F+++YnPr s+seF+++++k+++++++++svGmRfk+++e+ed+serr +G+++g +++dp  W++SkW++L
  OGLUM01G29850.1 273 VAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADP-MWHGSKWKCL 353
                      799********************************************************************.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY  60
LPQGHLEHLG AAPGSGPGAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM  120
REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL  180
QRPSQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE  240
LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPR LSQSEFIIPY  300
WKFMRSFSQP FSVGMRFKLR YESEDASERR RTGIIIGSRE ADPMWHGSKW KCLVVKWDDD  360
VECRRPNGVS PWEIELSGSV SGSHLSTPHS KRLKSCFPQV NPDIVLPNGS VSSDFAESAR  420
FHKVLQGQEL LGLKTRDGTV NTASQATEAR NFQYTDERSC SINMSNNILG VPRLGVKTPS  480
GNPGFSYHCS GFGESQRFQE VLQGQEVFCP YRGGTLSDAC IRGSGFRQPD GNHAPGAAFK  540
WLAPQGCGIT TSVLPQASSP SSVLMFPQTS SKMPGLEYIY GCLDRNENSR HFKIGPTQDM  600
TRTDQTLRLW PHLISGKVLD ECTRNEKLHS PVGGAEHESN NKCLNTNGCK IFGISLTEKA  660
QAGDEVDCGN ASYHSRLQSL KPQMPKSLGS SCATHFHMLC YRIQDDDRGN ADDARRMLVK  720
FVVMHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-164ARF family protein