PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G29870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 348aa MW: 37656.1 Da PI: 9.2608

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G29870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.5	1.2e-31	68	224	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk...............kvkaeekewyfFskrdkkyatg 71 lp+G++F+Ptd+el+ e+L+ k++ + ++++ i+ +i++++P++Lp +v ++ +fF++ +k+y+tg OGLUM01G29870.1 68 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGtsgrdvetigavrhgRVGKDGLIRHFFHRPSKAYTTG 160 799**********.99998885665443333333665557******5589999988866544333333355********* PP NAM 72 krknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +rk+r+++ + +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l OGLUM01G29870.1 161 TRKRRKVHtdeqggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 224 *744456555778********.9*********6657999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQVSQHVNL IKTCPSCGHR AQYEQAAAAA 60 TIQDLPGLPA GVKFDPTDQE LLEHLEGKAR PDARKLHPLI DEFIPTIEGE NGICYTHPER 120 LPGTSGRDVE TIGAVRHGRV GKDGLIRHFF HRPSKAYTTG TRKRRKVHTD EQGGETRWHK 180 TGKTRPVFTG GKLKGYKKIL VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KDGELVVSKV 240 FYQTQPRQCG GGSTATAKDL SVDLVAGNNI KASNAAAEHH HNDGVGGGGH GGNNSSMLKE 300 AAGIVDFYNP AAALIGYSQA APNNRAAASA HLTMPNFEVH TGGAGFGP

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQVSQHVNL IKTCPSCGHR AQYEQAAAAA  60
TIQDLPGLPA GVKFDPTDQE LLEHLEGKAR PDARKLHPLI DEFIPTIEGE NGICYTHPER  120
LPGTSGRDVE TIGAVRHGRV GKDGLIRHFF HRPSKAYTTG TRKRRKVHTD EQGGETRWHK  180
TGKTRPVFTG GKLKGYKKIL VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KDGELVVSKV  240
FYQTQPRQCG GGSTATAKDL SVDLVAGNNI KASNAAAEHH HNDGVGGGGH GGNNSSMLKE  300
AAGIVDFYNP AAALIGYSQA APNNRAAASA HLTMPNFEVH TGGAGFGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-120	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G29870.1