PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G29920.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1869aa MW: 208228 Da PI: 5.2926

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G29920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	49	103	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OGLUM01G29920.1 49 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 103 688999***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1869 aa Download sequence
MDDGDGAAPA EGSAASTPPP APPAAAAAAA AAVSAGSTGA SGSGEKTVKR MMKSPYQLEV 60 LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR REEEAAAVPL 120 MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL SAPDIGRRYY 180 EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL PPGSFGAPIV 240 PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKRKSMV GNLPPVHPHA 300 GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT PGSHLLRGSD 360 EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG QYGISQVAGI 420 ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ DMMKRKREEQ 480 MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR RAEKQRQKEE 540 LRKEKEAARQ KAANERATAR RIAREYMELV EDERLELMEL AAQSKGLPSM LSLDSDTLQQ 600 LDSFRGMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL ASLHQVWKFS 660 ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA 720 GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN 780 EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG 840 LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS 900 EVVLSSAREK IRAFQNVISD SEAEKEADDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP 960 LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKSSLGKP SSANTSSDSP 1020 VRASSEYHEV PPTDAEDKEI DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVSVANEG 1080 NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DVNQENATES 1140 TPTPFHNVDK HNDGNAGVVD NNNNEIIDHN SNAANASYER NGLGQDITAT PDTLSVQQYA 1200 YADKTRSQLR AYIGHRAEQL FVYRSLPLGL DRRRNRYWQF STSASPNDPG SGRIFFECRD 1260 GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL 1320 KNGATEMIRA SYRSDFGSPS SNLSGVTSDS ATAYSDSFKI ELGRNDAEKT AISKRADVFI 1380 RWMWRECNDC KLTCAMEYGK KRCFELMHSC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH 1440 ASQCEDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV 1500 KLHSTTSLEE IFQMLTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL 1560 PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL 1620 DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR 1680 RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE 1740 WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID 1800 DDVSEEEDED AEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGV EANADEDEGG 1860 SSYSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1869 aa Download sequence

MDDGDGAAPA EGSAASTPPP APPAAAAAAA AAVSAGSTGA SGSGEKTVKR MMKSPYQLEV  60
LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR REEEAAAVPL  120
MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL SAPDIGRRYY  180
EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL PPGSFGAPIV  240
PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKRKSMV GNLPPVHPHA  300
GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT PGSHLLRGSD  360
EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG QYGISQVAGI  420
ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ DMMKRKREEQ  480
MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR RAEKQRQKEE  540
LRKEKEAARQ KAANERATAR RIAREYMELV EDERLELMEL AAQSKGLPSM LSLDSDTLQQ  600
LDSFRGMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL ASLHQVWKFS  660
ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA  720
GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN  780
EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG  840
LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS  900
EVVLSSAREK IRAFQNVISD SEAEKEADDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP  960
LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKSSLGKP SSANTSSDSP  1020
VRASSEYHEV PPTDAEDKEI DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVSVANEG  1080
NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DVNQENATES  1140
TPTPFHNVDK HNDGNAGVVD NNNNEIIDHN SNAANASYER NGLGQDITAT PDTLSVQQYA  1200
YADKTRSQLR AYIGHRAEQL FVYRSLPLGL DRRRNRYWQF STSASPNDPG SGRIFFECRD  1260
GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL  1320
KNGATEMIRA SYRSDFGSPS SNLSGVTSDS ATAYSDSFKI ELGRNDAEKT AISKRADVFI  1380
RWMWRECNDC KLTCAMEYGK KRCFELMHSC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH  1440
ASQCEDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV  1500
KLHSTTSLEE IFQMLTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL  1560
PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL  1620
DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR  1680
RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE  1740
WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID  1800
DDVSEEEDED AEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGV EANADEDEGG  1860
SSYSSEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1681	1691	RGRTRGRGRGR
2	1683	1693	RGRTRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G29920.1