PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G30190.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 292aa MW: 31422.1 Da PI: 9.5478

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G30190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.8	1e-23	18	143	8	126
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk 95 hPtd+elv++yL+++v++ ++ + ++e+d+y ++P dL k ++ +++ wyfF++ ++k++ g+r+ ra+ g W++ k+v+ OGLUM01G30190.1 18 HPTDQELVTKYLRRHVDSGGNPW-RYVHEADVYAADPDDLTgKyspaVASDGSRAWYFFTTVRSKSTGGQRRARAVGvGGCWHSEAGAKDVVGG 110 9*****************999.88**********84366644444777****************65549999999999986 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmhey 126 + + +g ++ + f +++ p+ +++ W+m e OGLUM01G30190.1 111 irSPRPIGRRQFFSFVNKEGPRRVRSGWIMVEI 143 656777***********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MSPSRPDEAD PAADFGSHPT DQELVTKYLR RHVDSGGNPW RYVHEADVYA ADPDDLTGKY 60 SPAVASDGSR AWYFFTTVRS KSTGGQRRAR AVGVGGCWHS EAGAKDVVGG IRSPRPIGRR 120 QFFSFVNKEG PRRVRSGWIM VEIGLKYAQQ NASSDELVLC KVYRSPRAPP AAAAANKSMA 180 APPPTATKSK TEEATPPPDD VKPVVVAAQT PDTKILRAAK EAAAAATGCK RKADVKSSGA 240 RRGKRLCSRC RAETSESDSE TAVLDRSPSI EDETADSSEI HGSSDGKFIR FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	6e-12	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G30190.1