PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G30780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 317aa MW: 33724 Da PI: 8.0704

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G30780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEdell +v+ +G+g +W + +++ g++R++k+c++rw++yl OGLUM01G30780.1 14 RGPWSPEEDELLRSYVRSHGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36	1.6e-11	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T +Ed ++ + + G++ W+ Ia++++ gRt++++k++w++ OGLUM01G30780.1 71 YTDQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 699**************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MGRAPCCDKA SVKRGPWSPE EDELLRSYVR SHGTGGNWIA LPQKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTDQEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMAM 120 HHHQPPPPQQ QQHYHHHHHR VAGGGARVTL VSPPPAPQSQ CASMQPSPAS ASSSGGDACS 180 FGAAAMYSPS PSTQQAPQAA TLAVAGYTSV ATAAAAAAVA AQRSPLDELI CQVPPPPTTT 240 AADCWASGVT LDDVFLPELV GAGEFPNGDL FGGFGPLLQD RSSMELSACY FPNSAAADMW 300 PAATDIVKPA GLCHSLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-67	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G30780.1