PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G32180.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 394aa MW: 40353.7 Da PI: 7.0573

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G32180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	291	331	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P + K++ a++L +A Y+k L OGLUM01G32180.1 291 ARLRRERVSDRLRVLQKLVPGgN------KMDTASMLDEAASYLKFL 331 599***************955......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL 60 QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG 120 GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGGYDAEV VSPTSTMSAA TQSLHPKRKL 180 YDDHHHPAGI AAAAAAPPLA PCPRPTTGAV AAKRRASTSA TSITFGHQPH HHHAGATTAG 240 YEPDMEAMAQ VKEMIYRAAA MRPVHLGTEA AADKPRRKNV RISSDPQTVA ARLRRERVSD 300 RLRVLQKLVP GGNKMDTASM LDEAASYLKF LKSQVQKLET LGTTTTTSKL PQQYYSGNIN 360 NSNNHHGFLG FAANNSTISA GYANSNAGNA TKLL

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL  60
QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG  120
GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGGYDAEV VSPTSTMSAA TQSLHPKRKL  180
YDDHHHPAGI AAAAAAPPLA PCPRPTTGAV AAKRRASTSA TSITFGHQPH HHHAGATTAG  240
YEPDMEAMAQ VKEMIYRAAA MRPVHLGTEA AADKPRRKNV RISSDPQTVA ARLRRERVSD  300
RLRVLQKLVP GGNKMDTASM LDEAASYLKF LKSQVQKLET LGTTTTTSKL PQQYYSGNIN  360
NSNNHHGFLG FAANNSTISA GYANSNAGNA TKLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	279	DKPRRKN
2	274	279	KPRRKN
3	292	297	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-34	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G32180.1