PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G33400.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 389aa MW: 43291.6 Da PI: 10.7159

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G33400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.8	3.1e-21	21	120	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffkvl + ++rl +p +f++++ +g ke s+ tle +sgr+W v + r++ +++++t+GW +Fv+++ L+e +fvvF++dg OGLUM01G33400.1 21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDG 109 56666..3444.457******888**996666799*************..*******************************9 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++f + +vf++ OGLUM01G33400.1 110 NTRF--TAMVFDR 120 9999..6666665 PP
2	B3	53.6	4.2e-17	280	366	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ +v s ++++p f ++h ++e ++++l+d+ g++W+v +i ++++r l++GW F++ n L+egD +vF+l+ ef +v++fr OGLUM01G33400.1 280 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFR 366 6788999999*******9995..345679***********4.444455..9********************9986666..999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA 60 ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR 120 TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMVT YRASPSGSTA 180 VKNEEDADEL PVCELPASSA SPPRHVPEGA LDADGGAARR GAAKTRSLQD DLALASIPPS 240 IRRYKGYVSR RRAVTTAERQ RATEIAHAFR SPLPYCVIRM STMHVYYSFM MRFPTGFSRQ 300 HLPRERTDVV LRDPGGKVWS VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVAAAEF 360 RVHIFRVVEP AVPAVRLRRV TVTCGRGPT

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA  60
ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR  120
TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMVT YRASPSGSTA  180
VKNEEDADEL PVCELPASSA SPPRHVPEGA LDADGGAARR GAAKTRSLQD DLALASIPPS  240
IRRYKGYVSR RRAVTTAERQ RATEIAHAFR SPLPYCVIRM STMHVYYSFM MRFPTGFSRQ  300
HLPRERTDVV LRDPGGKVWS VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVAAAEF  360
RVHIFRVVEP AVPAVRLRRV TVTCGRGPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	3e-15	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G33400.1