PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G34330.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 225aa MW: 25041.2 Da PI: 6.6999

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G34330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	87	112	3	26
S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG..tCkyGdrCkFaHg 26 e+C++f+ C++G+ C+FaHg OGLUM01G34330.1 87 GEPCPDFRVAAraACPRGSGCRFAHG 112 5899999999999************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MAYETSSDHQ LAAAAEFLAA LQVHLAGAEA SSPTWGGRCA YDEDFMMYEF KVRRCPRSRA 60 HEWTSCPYAH PGEAARRRDP SHVTYTGEPC PDFRVAARAA CPRGSGCRFA HGTFETWLHP 120 SRYRTRPCRS GMLCARPVCF FAHNDKELRI VGDDAAAATP SPRSPFTTSE DSPPPSPMDM 180 KQIVLAMQQM DARKATRSVA PKTDMLQQEL EEDAPELGWV SDLLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	7e-45	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G34330.1