PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G35030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 440aa MW: 49460.4 Da PI: 5.1736

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G35030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.7	2.1e-34	13	103	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+ye+++d++++ ++ w+ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F kg+++ l+ OGLUM01G35030.1 13 FLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIKGQRHRLK 97 9*************************************************************9998.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k OGLUM01G35030.1 98 YIHRRK 103 **98 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MEGGGGGGSL PPFLSKTYEM VDDPSTDAVV GWTPAGTSFV VANQPEFCRD LLPKYFKHNN 60 FSSFVRQLNT YGFRKVDPEQ WEFANEDFIK GQRHRLKYIH RRKPIFSHSS HSQGAGPLTD 120 NERKDYEEEI ERLKSDNAAL SSELQNNTLK KLNMEKRMQA LEEKLFVVED QQRSLISYVR 180 EIVKAPGFLS SFVQQQDHHR KKRRLPIPIS FHEDANTQEN QIMPCDLTNS PAQTFYRESF 240 DKMESSLNSL ENFLREASEE FGNDISYDDG VPGPSSTVVL TELHSPGESD PRVSSPPTRM 300 RTSSAGAGDS HSSRDVAEST SCAESPPIPQ MHSRVDTRAK VSEIDVNSEP AVTETGPSRD 360 QPAEEPPAVT PGANDGFWQQ FLTEQPGSSD AHQEAQSERR DGGNKVDEMK SGDRQHLWWG 420 KRNVEQITEK LGHLTSTEKT

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MEGGGGGGSL PPFLSKTYEM VDDPSTDAVV GWTPAGTSFV VANQPEFCRD LLPKYFKHNN  60
FSSFVRQLNT YGFRKVDPEQ WEFANEDFIK GQRHRLKYIH RRKPIFSHSS HSQGAGPLTD  120
NERKDYEEEI ERLKSDNAAL SSELQNNTLK KLNMEKRMQA LEEKLFVVED QQRSLISYVR  180
EIVKAPGFLS SFVQQQDHHR KKRRLPIPIS FHEDANTQEN QIMPCDLTNS PAQTFYRESF  240
DKMESSLNSL ENFLREASEE FGNDISYDDG VPGPSSTVVL TELHSPGESD PRVSSPPTRM  300
RTSSAGAGDS HSSRDVAEST SCAESPPIPQ MHSRVDTRAK VSEIDVNSEP AVTETGPSRD  360
QPAEEPPAVT PGANDGFWQQ FLTEQPGSSD AHQEAQSERR DGGNKVDEMK SGDRQHLWWG  420
KRNVEQITEK LGHLTSTEKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	7e-87	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G35030.1