PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G35360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 714aa MW: 78007.9 Da PI: 7.8379

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G35360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.5	7e-25	174	275	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + OGLUM01G35360.1 174 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhkQLR--PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 263 99************************99865444..4669********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ OGLUM01G35360.1 264 DDGELRLGVRRA 275 89999**997 PP
2	Auxin_resp	114.9	7e-38	300	380	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF+++YnPra++se+vv+++k++k+++++v++GmRfk++fe+ed++err sG+++gvs++dp+rWp+SkWrsL OGLUM01G35360.1 300 VADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHFESEDVNERR-SGMIAGVSEVDPIRWPGSKWRSL 380 578899**************************************************.9******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPA 60 PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGG IRGEVAVALP PHVACRVVDV 120 ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT 240 TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV 300 ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHFES EDVNERRSGM 360 IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASSSK 420 RTKLCPQGNL DVPALYGNGR PDSVETEKFP RVLQGQELMG SRTHRVTCSP QSIDITKSKS 480 FDAWRFLTDT RSCMLGSSTS RLPVQYSGYT HQSVSFGESI GFPEVLQGQE ISQTVPPFQG 540 MLPDACSAKS RYELKNYVCT PATMNGLSSA NEGYCLSLST VPPSPPSSLM LYQTGVPQLE 600 LASKNNDKSG NDSQPALRQH KLLSETSWDQ FKIGKASTPG NATKPGNGGR EVDRTSCRLF 660 GFSLTEKIIP TDKDGEKEVS YETDCQNPRM LDLFGYNCST PGALHALCAA PLGI

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPA  60
PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGG IRGEVAVALP PHVACRVVDV  120
ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA  180
SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT  240
TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV  300
ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHFES EDVNERRSGM  360
IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASSSK  420
RTKLCPQGNL DVPALYGNGR PDSVETEKFP RVLQGQELMG SRTHRVTCSP QSIDITKSKS  480
FDAWRFLTDT RSCMLGSSTS RLPVQYSGYT HQSVSFGESI GFPEVLQGQE ISQTVPPFQG  540
MLPDACSAKS RYELKNYVCT PATMNGLSSA NEGYCLSLST VPPSPPSSLM LYQTGVPQLE  600
LASKNNDKSG NDSQPALRQH KLLSETSWDQ FKIGKASTPG NATKPGNGGR EVDRTSCRLF  660
GFSLTEKIIP TDKDGEKEVS YETDCQNPRM LDLFGYNCST PGALHALCAA PLGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-151	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G35360.1