PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G35890.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 777aa    MW: 84336.8 Da    PI: 7.0322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G35890.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2096151156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r++ +++t+eq++++e+lF+++++p++++r++ +k+lgL+ rqVk+WFqNrR++ k
  OGLUM01G35890.1  96 RKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQIK 151
                      788999**********************************************9877 PP
2START173.51.3e-543125382206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                      la +a++elv + +++ep+Wv+ +    +++n+de+++ f ++++         ++ea+r++g+v  ++++lv +++d+  +W+  ++    ka
  OGLUM01G35890.1 312 LATRALDELVGMCSSGEPVWVRGVetgrDILNYDEYVRLFRRDHGgsgdqmagWTVEASRECGLVYLETMQLVHTFMDVD-KWKDLFPtmisKA 404
                      577899************************************999***********************************.99998888888** PP

                      EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
            START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                      +tle is+       g+lqlm+aelq l+p+vp R+ +f+Ry+++l a++w+ivdvS d+ +     ss vR+ + pSg+lie+  ng++k+tw
  OGLUM01G35890.1 405 ATLEMISNReddgrdGVLQLMYAELQTLTPMVPtRELYFARYCKKLAAERWAIVDVSFDESETGVHASSAVRCWKNPSGCLIEEQNNGRCKMTW 498
                      *******99999***********************************************9999998**************************** PP

                      EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      veh+ ++  ++  l+r +  sg+a+ga++wva+lq qce+
  OGLUM01G35890.1 499 VEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCER 538
                      **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    
MGTNRPRPRT KDFFAAPALS LTLAGVFGRK NGPAASGGDG VEEGDEEVQA AGEAAVEISS  60
ENAGPGCSQS QSGGGSGEDG GHDDDDGEGS NKKRRRKNYH RHTAEQIRIM EALFKESPHP  120
DERQRQQVSK QLGLSARQVK FWFQNRRTQI KAVQERHENS LLKSELEKLQ DEHRAMRELA  180
KKPSRCLNCG VVATSSDAAA AATAADTREQ RLRLENAKLK AEVCMPPPRS RARPFRCATL  240
QDTDSGELAM LNLFQIERLR GTPGKSAADG VASPPCSASA GAMQTNSRSP PLHDHDGGFL  300
RHDDDKPRIL KLATRALDEL VGMCSSGEPV WVRGVETGRD ILNYDEYVRL FRRDHGGSGD  360
QMAGWTVEAS RECGLVYLET MQLVHTFMDV DKWKDLFPTM ISKAATLEMI SNREDDGRDG  420
VLQLMYAELQ TLTPMVPTRE LYFARYCKKL AAERWAIVDV SFDESETGVH ASSAVRCWKN  480
PSGCLIEEQN NGRCKMTWVE HTRCRRCTVA PLYRAVTASG VAFGARRWVA ALQLQCERMV  540
FAVATNVPTR DSTGVSTLAG RRSVLKLAHR MTSSLCRTTG GSRDMAWRRA PKGGSGGGGD  600
DDIWLTSREN AGDDPGEPQG LIARVNLAKG KDRTNCVTAY AARPEEEEER GGKWVLQDVC  660
TNPCESTIAY AAIDAAALQP VIAGHDSSGV HLLPCGFISV MPDGLESKPA VITASRRGGE  720
ASGAGSLVTV AFQVPASPSA AAATLSPDSV EAVTVLVSST LRNIRKALGC DSFEEEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198NKKRRRKN
29297KKRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-169HD-ZIP family protein