PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G36910.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 261aa    MW: 28492.7 Da    PI: 5.0549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G36910.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12131180455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h +rEr RR+r+ ++++ L+ +lP+ a   +s K  K +i+  A +YI++L+
  OGLUM01G36910.1 131 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 180
                      599***********************88...*******************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MENDDDVEHP FYYFVHDDAA AGVDDHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ  60
STAAMASSSS SSESLSRRYH SSASNVHRRM HRFLRSIYDD AGDDAGATAE MQPAEGEQQQ  120
ASPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASS SKGGKNTIVA AAANYIRELE  180
GRKGWLCAQN ELLERTTPKP GAGMVVKVRA ESELGSTVDV FEAVLRRLKA MDELQVTAIQ  240
SWFGAGGMWM DVAVESKEKE D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RLRRER