PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G37590.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 392aa    MW: 41417.1 Da    PI: 6.7358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G37590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052823191254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OGLUM01G37590.1 282 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 319
                      677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MADEWWSASQ RSHGTSACSA APSPLTADRV SCGWTSPAAA AAAESTSSIT FQDPSRSSAA  60
HHQPLSDAAS SLGDPHMVDW TQAFLSGRSD ASFQAVLQDD MAASTRPFRA QPTAADEAVM  120
TNPFRDMGVG QGLLLDQASA PLHGLSFDAG EPAVAPATHS ITTSFGDYQH SASYDAAAAV  180
MQFSQTPRAP SLPAAAQMQF LSGSYQLPFG GAPPLPSQLL LQAMQPKPSC SSNANTLLAK  240
SNSGSAQQIC SSAGRKSVSD SPAAAKRPRI EAPSPLPTFK VRKEKLGDRI TALQQLVSPF  300
GKTDTASVLH EAIEYIKFLH EQVASLSSPY LKNGNPLQHF QQKGSESTKD AEQPKPDLRS  360
RGLCLVPVAS TYTVASETVP EFWHPTFGGT FR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-51bHLH family protein