PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G37640.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 485aa MW: 50558.7 Da PI: 9.578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G37640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	244	266	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ Fs ++ L+ H + H OGLUM01G37640.1 244 SCHRCGEQFSKWEALEAHHLSkH 266 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA 60 AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN 120 PIAHEVVLST NSRCELKITG FGGCGGLAAA AAGGGVLASP HEADGDGAVV SSFVGTLRPG 180 TPGPGWSHGL QYSGSCRGSM RCTPPRSPNV LLDSRDAAAA GVTAHRASCE DAVKSCGKGG 240 GGLSCHRCGE QFSKWEALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE 300 RVFKVHNTQR TLARFEEYRE AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAAG 360 SSSLCASDKC AVCRIIRHGF SAKKEGKAGV GVFTTSTSGR AYESIEASAG AVVGGDDPAA 420 TRKALLVCRV IAGRVHKPLE NLKEFAGQTG FDSLAGKVGP YSNIEELYLL NPRALLPCFV 480 VICKA

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA  60
AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAA AAGGGVLASP HEADGDGAVV SSFVGTLRPG  180
TPGPGWSHGL QYSGSCRGSM RCTPPRSPNV LLDSRDAAAA GVTAHRASCE DAVKSCGKGG  240
GGLSCHRCGE QFSKWEALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE  300
RVFKVHNTQR TLARFEEYRE AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAAG  360
SSSLCASDKC AVCRIIRHGF SAKKEGKAGV GVFTTSTSGR AYESIEASAG AVVGGDDPAA  420
TRKALLVCRV IAGRVHKPLE NLKEFAGQTG FDSLAGKVGP YSNIEELYLL NPRALLPCFV  480
VICKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-139	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G37640.1