PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G39390.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 280aa    MW: 29456.9 Da    PI: 5.8886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G39390.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.42.2e-21113174258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S..SST.TEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa..edp.kvveitYegeHnh 58 
                       Dg+ WrKYGqKe++g ++pr YYrC+++  gC ++++v++s+  +dp  +++i Y geH++
  OGLUM01G39390.1 113 ADGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATRRVQQSQsqDDPaAAFVIAYYGEHTC 174
                      6***************************9999********87621455257899******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MAMLGSSSAV VLELMTMGYQ SAAYLGELLR AASPAQAGDE QQELAAEILR CCDRVIAKLS  60
RGGATGATTG KKRKAAESAA AAAMTSSSLP VTPTKRRARG AEAVREVRSG TTADGFIWRK  120
YGQKEINGCK HPRLYYRCAF RGQGCLATRR VQQSQSQDDP AAAFVIAYYG EHTCGGNAAA  180
AAACRDGELM PPAVINSGAS SFAAAWNMAS REPASSLAVE RRSCDGDAPS ETSQGWSPSF  240
SSEVELDVVG FDLAGADSSA SPVWEFLNGS FDWESVINSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-15WRKY family protein