PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G40470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 217aa MW: 22737.9 Da PI: 9.6729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G40470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H OGLUM01G40470.1 59 FECKTCNRQFPTFQALGGHRASH 81 89**********99999998887 PP
2	zf-C2H2	10.7	0.0017	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H OGLUM01G40470.1 122 HECPVCGLEFPIGQALGGHMRRH 144 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MSKRSRSMWD MQEFVGSVDT ARVLMLLAQQ SQHGLLGGGG FAAGAQPVVV RGGAHDRVFE 60 CKTCNRQFPT FQALGGHRAS HKRPRQQQQH ALGGGAGADD AGLCLGRQPT PPRPQPAKPR 120 VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL 180 DLNLTPSENR AKCRNVVGLG AGGQGVHKAL AMLDCFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-24	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G40470.1