PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G40530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 167aa MW: 17302.3 Da PI: 6.2295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G40530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00095	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H OGLUM01G40530.1 43 FECKTCSKRFPSFQALGGHRTSH 65 89**********99998888777 PP
2	zf-C2H2	11.6	0.00089	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H OGLUM01G40530.1 92 HECAVCGVEFSMGQALGGHMRRH 114 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MESLRVHASA LLSLSSPAAS ASQPTSSSST PAGRRALAAE GVFECKTCSK RFPSFQALGG 60 HRTSHTRLQA KLLSDPAAAA AAAAERDRAR VHECAVCGVE FSMGQALGGH MRRHRGETGT 120 TTVVLADADD SGGATVPQPP EPMPDLNYPP LEDAGDGSEP ELLNLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	1e-24	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G40530.1