PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G40630.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 313aa    MW: 33229.4 Da    PI: 10.0595
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G40630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-2043102357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       R+t+tkeq+ +Le l+++  r+p+ae++++++++l    +++ ++V++WFqN++a++++
  OGLUM01G40630.1  43 ARWTPTKEQIAVLEGLYRQgLRTPTAEQIQQITARLrehgHIEGKNVFYWFQNHKARQRQ 102
                      7*****************99**************************************96 PP
2Wus_type_Homeobox115.52.6e-3742104365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RWtPt+eQi +Le ly++GlrtP++e+iq+ita+L+e+G+ie+kNVfyWFQN+kaR+rqkq
    OGLUM01G40630.1  42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104
                        78***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
METTTTTLGG GAGGRAGGFS DPPSPLSPPL SPASAAAAAL ANARWTPTKE QIAVLEGLYR  60
QGLRTPTAEQ IQQITARLRE HGHIEGKNVF YWFQNHKARQ RQKQKQQSFD YFSKLFRRPP  120
PLPVLHRPLA RPFPLAMAPT AMPPPPPPPA TTTTAACNAG GVMFRTPSLM PVATNNASYY  180
PQQQTPLLYP GMEVCPHDKS TAQPPATTTM YLQAPPSSAH LAAAAGRGAA EAEGHGRRGG  240
GAGGRETLQL FPLQPTFVLP DHKPRRAGSA CAAVSPTTPS ASASFSWESE SSDSPSSEAP  300
PFYDFFGVHS GGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-27WOX family protein