PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G40780.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 578aa MW: 62886.7 Da PI: 8.6059

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G40780.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.7e-10	67	98	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEde l +av+ + g++Wk+I ++ + OGLUM01G40780.2 67 KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYN 98 688************************99876 PP
2	Myb_DNA-binding	45.2	2.2e-14	114	153	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l OGLUM01G40780.2 114 EDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 153 9**********************.***********97 PP
3	Myb_DNA-binding	60.4	4e-19	159	202	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ OGLUM01G40780.2 159 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 202 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS 60 GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIEQRYNAC IDGKRFLILN LSKEDDQIID 120 LVKKYGPTKW SVIAKALPGR IGKQCRERWH NHLNPEIRKD AWTTEEEQAL INAHRIYGNK 180 WAEIAKVLPG RTDNSIKNHW NSSLRKKQDM YNTSNNLVVP KLLVHDKFKD KPKLMAMEGH 240 LDLNKAPIIN SKDQPGTAHR SNCSGFLSRS SLPTAQPLTS REASVVDGSA VTLVAQGLES 300 DSVRGKGLEI DSVHEKGLEV NSAPDHTGNS WTIQLEAAPS KGEAELSLKN EARSLGPLCY 360 QIPNMEDVVP VSSSLFSDHL TGNHTSEHCG DDILSPAGCT TPPPTKGKLT SQLSVDSILK 420 SAANSFPGTP SILKRRKRDK STPVSASEMK ISGSNTDRFY TPMGMEPATA TPESFKTTSF 480 LSLGSLDGSV KSFDVSPQYR ARSKRMALTK TVEKQLDFSS DGLDTCGSEI LNSSCNNSQS 540 TLSITEAPKL KEKEHAEHAV QLENLTKNFA HTTNLDVT

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS  60
GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIEQRYNAC IDGKRFLILN LSKEDDQIID  120
LVKKYGPTKW SVIAKALPGR IGKQCRERWH NHLNPEIRKD AWTTEEEQAL INAHRIYGNK  180
WAEIAKVLPG RTDNSIKNHW NSSLRKKQDM YNTSNNLVVP KLLVHDKFKD KPKLMAMEGH  240
LDLNKAPIIN SKDQPGTAHR SNCSGFLSRS SLPTAQPLTS REASVVDGSA VTLVAQGLES  300
DSVRGKGLEI DSVHEKGLEV NSAPDHTGNS WTIQLEAAPS KGEAELSLKN EARSLGPLCY  360
QIPNMEDVVP VSSSLFSDHL TGNHTSEHCG DDILSPAGCT TPPPTKGKLT SQLSVDSILK  420
SAANSFPGTP SILKRRKRDK STPVSASEMK ISGSNTDRFY TPMGMEPATA TPESFKTTSF  480
LSLGSLDGSV KSFDVSPQYR ARSKRMALTK TVEKQLDFSS DGLDTCGSEI LNSSCNNSQS  540
TLSITEAPKL KEKEHAEHAV QLENLTKNFA HTTNLDVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	435	440	RRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	5e-79	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G40780.2