PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G40860.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 208aa MW: 22274.5 Da PI: 7.9173

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G40860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	1.9e-32	3	59	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h OGLUM01G40860.1 3 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 59 6*******************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MPADGYKWRK YGQKSIKNNP HPRSYYKCTS SRCSAKKHVE KSTDDPEMLI VTYEGSHHHG 60 PQPLFPPHIA QPPPPTSVVG FSAASGAGPP PSSPAAAARK RKNYVRAAFS PTTSEDDGDG 120 AGRLRPEWPQ DDGTSCDVAE LRRRGDAEHA APRRVATDRS CDDGGGGGST SASSSVARAD 180 AATALSSDSP PTIWSCLDWP WSQETLFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	9e-25	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G40860.1