PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G41580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 200aa MW: 22721.5 Da PI: 8.3453

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G41580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.2e-20	11	72	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF+ r+ps+e++++++++l +++ ++V++WFqN++a+e++ OGLUM01G41580.1 11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72 568***************99************************************95 PP
2	Wus_type_Homeobox	110.9	6.9e-36	12	73	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gk+e+kNVfyWFQN+kaRer++ OGLUM01G41580.1 12 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73 78**********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLSA FGKVESKNVF 60 YWFQNHKARE RHHHKKRRRG ASSPDSGSND DDGRAAAHEG DADLVLQPPE SKREARSYGH 120 HHRLMTCYVR DVVETEAMSE RPTREVETLE LFPLKSYDLE VDKVRYVRGG GGEQCREISF 180 FDVAAGRDPP LELRLCSFGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	4e-36	WOX family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G41580.1