PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G42400.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 173aa MW: 19278.5 Da PI: 9.0793

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G42400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4.1e-08	15	63	1	47
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 r +W++ Ed+ + a + + + +W+++a+ ++ gRt+ + +++q + OGLUM01G42400.1 15 RRPWSKVEDKVFESALVMCPEDvpgRWALVAAQLP-GRTPQEALEHYQVL 63 679******************************.****99999976 PP
2	Myb_DNA-binding	41.3	3.6e-13	106	150	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++++ ++G g+W+ I+r +Rt+ q+ s+ qky OGLUM01G42400.1 106 PWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 150 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MDLYGAAAGG GPVARRPWSK VEDKVFESAL VMCPEDVPGR WALVAAQLPG RTPQEALEHY 60 QVLVADIDLI MRGAVDAPGS WDDNDGNDRR GGGGKPRGEE RRRGVPWSED EHRLFLEGLD 120 RYGRGDWRNI SRFSVRTRTP TQVASHAQKY FIRQANAGAR DSKRKSIHDI TTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-43	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G42400.1