PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G42590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 884aa MW: 95397.8 Da PI: 6.2506

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G42590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	687	724	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq OGLUM01G42590.1 687 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 724 77899**********6.....5899999*******9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA 60 MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG 120 QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCEGIQVM EEAAFIDHVR SLFQQLGSST 180 AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY NDDMINHQFR HQKSPASTIQ 240 SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS 300 NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKV 360 DDLLSQDCLV GCQASNATSV NRKFQTLSIV DNTKLQDGSY AIPHAALVDS TRYSDCFQSL 420 LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN 480 DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA 540 IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT 600 EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ ASDSLSTGQC 660 KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI VPNSAKCSID TLLEKTIKHM 720 LFLQNVAKHA DKLKGSGEPK IVSHEEGLLL KDNFEGGATW AFEVGTRSMT CPIIVEDLNP 780 PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD KIWARFAVEA NKDVTRMEIF 840 LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPATGF SNCL

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence

MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCEGIQVM EEAAFIDHVR SLFQQLGSST  180
AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY NDDMINHQFR HQKSPASTIQ  240
SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS  300
NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKV  360
DDLLSQDCLV GCQASNATSV NRKFQTLSIV DNTKLQDGSY AIPHAALVDS TRYSDCFQSL  420
LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN  480
DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA  540
IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT  600
EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ ASDSLSTGQC  660
KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI VPNSAKCSID TLLEKTIKHM  720
LFLQNVAKHA DKLKGSGEPK IVSHEEGLLL KDNFEGGATW AFEVGTRSMT CPIIVEDLNP  780
PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD KIWARFAVEA NKDVTRMEIF  840
LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPATGF SNCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	5e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G42590.1