PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G44170.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 412aa MW: 42745.1 Da PI: 5.7098

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G44170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F ++ + H+r+H OGLUM01G44170.1 108 FPCHVCSKEFGSRKAVHGHMRVH 130 89*******************99 PP
2	zf-C2H2	16.8	1.9e-05	301	323	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs+ L H+r+H OGLUM01G44170.1 301 HPCKTCGKEFSTGVALGGHMRKH 323 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDDEE EEEEEEGVNP ASKRRRLEDI 60 LAETRGALPL PSPTPSSSGS EGTISDDHGD GIAGAAAAAD APVARVAFPC HVCSKEFGSR 120 KAVHGHMRVH QADKDKEKEP SLHLALGWTS TGKRGANGNA RAVTVAFAPM EQAVGDDDGD 180 ARAIVLAPAA QPQPQPMVVA EAANPPNQVA DDNHRLPVPA AAPYVGAAAA PARRRARPKR 240 NAGQGGPYRC SYPGCKGEYR THQGLGGHVA GHINREKQAA AAAQGGSGGG LGGGARPEGN 300 HPCKTCGKEF STGVALGGHM RKHYDPKKKK KHAGLVLTLS VAPPTPAPAP SIAGAALPPA 360 EVKADVDEHE AEQVPMAPVS PPAEVRGNIV RIFGVDIEKP ADEEEQEGGS DV

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDDEE EEEEEEGVNP ASKRRRLEDI  60
LAETRGALPL PSPTPSSSGS EGTISDDHGD GIAGAAAAAD APVARVAFPC HVCSKEFGSR  120
KAVHGHMRVH QADKDKEKEP SLHLALGWTS TGKRGANGNA RAVTVAFAPM EQAVGDDDGD  180
ARAIVLAPAA QPQPQPMVVA EAANPPNQVA DDNHRLPVPA AAPYVGAAAA PARRRARPKR  240
NAGQGGPYRC SYPGCKGEYR THQGLGGHVA GHINREKQAA AAAQGGSGGG LGGGARPEGN  300
HPCKTCGKEF STGVALGGHM RKHYDPKKKK KHAGLVLTLS VAPPTPAPAP SIAGAALPPA  360
EVKADVDEHE AEQVPMAPVS PPAEVRGNIV RIFGVDIEKP ADEEEQEGGS DV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	57	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	3e-09	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G44170.1