PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G45120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARR-B

Protein Properties

Length: 539aa MW: 59841.1 Da PI: 5.0076

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G45120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.8	7.6e-26	149	202	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+v+SHLQkYRl OGLUM01G45120.1 149 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 202 68*****************.9*****************************8 PP
2	Myb_DNA-binding	40.5	6.1e-13	151	201	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ ++++++v+av+q G + +k+I m+ g+t++++ s++qky+ OGLUM01G45120.1 151 RVVWSVDLHQKFVNAVNQIGFDkvGPKKILDLMNvPGLTRENVASHLQKYR 201 678***********************************************7 PP
3	Response_reg	80.7	4.8e-27	12	120	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+p+ +++l+++l+k y ev+++ ++ al++l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++ OGLUM01G45120.1 12 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALDILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQH 103 89*******************.***********877777******************6654.8***************** PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ OGLUM01G45120.1 104 GACDYLLKPVRMKELRN 120 ************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MDATAFPYGL RVLVVDDDPT WLKILEKMLR KCSYEVTTCG LARVALDILR ERKNKFDIVI 60 SDVNMPDMDG FKLLEHIGLE MDLPVIMMSI DGETSRVMKG VQHGACDYLL KPVRMKELRN 120 IWQHVYRKKM HEVKEIEDQE SSDGNTVKKA RVVWSVDLHQ KFVNAVNQIG FDKVGPKKIL 180 DLMNVPGLTR ENVASHLQKY RLYLSRLQKQ NEERILGAAR QDFSHKGTSE NLNLRSSFQE 240 QPSNIANGYP HASQNIQTQA NMLDSQLEDT KSTVPLPVPD KKRTLASDAA DSQNVTSASS 300 LGGVLSFKSM PVNQDRKPSE TMILECQAWT GGIPSKQFMQ YPKHNHKRCD LLGDYSCLPK 360 PDLEHPVGPS NLYAPPPLIS MSCGMEGDAR DFSDVKPAIM DCIKSLSPAL TCTVDSVSVQ 420 LSDSVVTSID GDLKSSGVDG LPSIKDCCLD QTNSQGSLRP SQEPSIIGST ELASLPEDLP 480 SYPLHGVSLE NIGLSSIDLL NYSDAMILSG LQSNWYDDLE FSSEMMDYPS IDECLFASS

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MDATAFPYGL RVLVVDDDPT WLKILEKMLR KCSYEVTTCG LARVALDILR ERKNKFDIVI  60
SDVNMPDMDG FKLLEHIGLE MDLPVIMMSI DGETSRVMKG VQHGACDYLL KPVRMKELRN  120
IWQHVYRKKM HEVKEIEDQE SSDGNTVKKA RVVWSVDLHQ KFVNAVNQIG FDKVGPKKIL  180
DLMNVPGLTR ENVASHLQKY RLYLSRLQKQ NEERILGAAR QDFSHKGTSE NLNLRSSFQE  240
QPSNIANGYP HASQNIQTQA NMLDSQLEDT KSTVPLPVPD KKRTLASDAA DSQNVTSASS  300
LGGVLSFKSM PVNQDRKPSE TMILECQAWT GGIPSKQFMQ YPKHNHKRCD LLGDYSCLPK  360
PDLEHPVGPS NLYAPPPLIS MSCGMEGDAR DFSDVKPAIM DCIKSLSPAL TCTVDSVSVQ  420
LSDSVVTSID GDLKSSGVDG LPSIKDCCLD QTNSQGSLRP SQEPSIIGST ELASLPEDLP  480
SYPLHGVSLE NIGLSSIDLL NYSDAMILSG LQSNWYDDLE FSSEMMDYPS IDECLFASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-108	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G45120.1