PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G45290.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1286aa MW: 142112 Da PI: 8.7188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G45290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	1192	1214	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L +H ++H OGLUM01G45290.1 1192 CPvkGCGKKFFSHKYLLQHRKVH 1214 9999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1286 aa Download sequence
MRPSPPPAAP AAEPVPPWLR SLPVAPEFRP TAAEFADPVS YILKIEPAAA PYGICKVVPP 60 LPPPPKKATF SNLSRSFAAL HPDDRSPSFP TRHQQVGLCP RRTRPGLKPV WRSSHRYTLP 120 QFESKAGATR KSLLADLNVP ASRQLTPLDH EVLFWRASAD RPIVVEYGSD MSGSGFSPCA 180 AQPQPPPQQQ PTARAAAHLG ETAWNMRGVA RSPGSLLRFM PEDVPGVTTP MLYVGMMFSW 240 FAWHVEDHDL HSLNYMHLGA AKTWYGVPRD AALAFEDVVR EHGYGGEVNP LETFATLGQK 300 TTVMSPEVLV ESGIPCCRLV QNAGEFVVTF PGSYHCGFSH GFNCGEASNI ATPDWLRIAK 360 EAAIRRASIN RPPMVSHYQL LYDLALSMRF REPSNGEMET RSSRIKEKKK CEGEQLVKKM 420 FIQNVIEDNE LLSHLLNDGS SCIILPANAH DGPGLSTLRS TDQSNMNSRI SHNLCSREEA 480 PEASGCLSPN RNGDTRNCIS SDTHNMEGDK GDIMSATGLL DQGLLSCVTC GILSFSCVAV 540 LKPRDSTARY LMSADSNSIN NQLSISGGSI LADAPTNERN GVISRPYSEH CCNEIMSDDA 600 EIDKNSALDL LAFAHGGQSD PEEDPLEKIL KIAHGINKSQ PNSSNNVGCV GTKLSSSSTE 660 RQERPSSQNA HCNGSSVISN GPKGVRTRNK YQLKMILSEG FQAKDIYSAK EKKVQSEPSS 720 SKGDVKETID VSGTENDVGC KSTTISVSEH RGSTKNMYSV KEKKVQSKPS SLKGTVKETV 780 DVSGTENDAR CKSITISVSE HRGSTPMTNS LAASIVKPDK DSSRMHVFCL EHAIEVEKQL 840 HAIGGSNIML ICRPEYPKIE AEARLLGEEM GLVYDWKGIH FKEANMEDRQ KIQEVLRDEE 900 AIPTSSDWAV KLGINLYYSA NLAKSPLYNK QMPYNRVIYR AFGCDSPNDS PVMFNTCERK 960 QSHQKKIVVA GRWCGKVWMS KQVHPYLAHR VESQEAEEAD RICSYHFDEK HKAEPVGNSS 1020 RVEASKRKSS SLTDVTESSN RRGEIPGEET NTKRPKHFQE NNLRALETAA EVVVPSPAGT 1080 GLRVSSRIAN RANKLKSKME KEDVPSSRPK SNIKEKSSHA SGQKSNVQEA NANSASHLRA 1140 MPPKQKAEAE AKKQIRTPKP PKQAVEYSCD IEGCSMSFRT KRDLSLHKSD ICPVKGCGKK 1200 FFSHKYLLQH RKVHTDDRPL TCPWEGCNMA FKWPWARTEH LRVHTGDRPY VCHEPGCAQT 1260 FRFVSDFSRH KRKTGHSVNK KKKAKS

Sequence ? help Back to Top

Protein Sequence Length: 1286 aa Download sequence

MRPSPPPAAP AAEPVPPWLR SLPVAPEFRP TAAEFADPVS YILKIEPAAA PYGICKVVPP  60
LPPPPKKATF SNLSRSFAAL HPDDRSPSFP TRHQQVGLCP RRTRPGLKPV WRSSHRYTLP  120
QFESKAGATR KSLLADLNVP ASRQLTPLDH EVLFWRASAD RPIVVEYGSD MSGSGFSPCA  180
AQPQPPPQQQ PTARAAAHLG ETAWNMRGVA RSPGSLLRFM PEDVPGVTTP MLYVGMMFSW  240
FAWHVEDHDL HSLNYMHLGA AKTWYGVPRD AALAFEDVVR EHGYGGEVNP LETFATLGQK  300
TTVMSPEVLV ESGIPCCRLV QNAGEFVVTF PGSYHCGFSH GFNCGEASNI ATPDWLRIAK  360
EAAIRRASIN RPPMVSHYQL LYDLALSMRF REPSNGEMET RSSRIKEKKK CEGEQLVKKM  420
FIQNVIEDNE LLSHLLNDGS SCIILPANAH DGPGLSTLRS TDQSNMNSRI SHNLCSREEA  480
PEASGCLSPN RNGDTRNCIS SDTHNMEGDK GDIMSATGLL DQGLLSCVTC GILSFSCVAV  540
LKPRDSTARY LMSADSNSIN NQLSISGGSI LADAPTNERN GVISRPYSEH CCNEIMSDDA  600
EIDKNSALDL LAFAHGGQSD PEEDPLEKIL KIAHGINKSQ PNSSNNVGCV GTKLSSSSTE  660
RQERPSSQNA HCNGSSVISN GPKGVRTRNK YQLKMILSEG FQAKDIYSAK EKKVQSEPSS  720
SKGDVKETID VSGTENDVGC KSTTISVSEH RGSTKNMYSV KEKKVQSKPS SLKGTVKETV  780
DVSGTENDAR CKSITISVSE HRGSTPMTNS LAASIVKPDK DSSRMHVFCL EHAIEVEKQL  840
HAIGGSNIML ICRPEYPKIE AEARLLGEEM GLVYDWKGIH FKEANMEDRQ KIQEVLRDEE  900
AIPTSSDWAV KLGINLYYSA NLAKSPLYNK QMPYNRVIYR AFGCDSPNDS PVMFNTCERK  960
QSHQKKIVVA GRWCGKVWMS KQVHPYLAHR VESQEAEEAD RICSYHFDEK HKAEPVGNSS  1020
RVEASKRKSS SLTDVTESSN RRGEIPGEET NTKRPKHFQE NNLRALETAA EVVVPSPAGT  1080
GLRVSSRIAN RANKLKSKME KEDVPSSRPK SNIKEKSSHA SGQKSNVQEA NANSASHLRA  1140
MPPKQKAEAE AKKQIRTPKP PKQAVEYSCD IEGCSMSFRT KRDLSLHKSD ICPVKGCGKK  1200
FFSHKYLLQH RKVHTDDRPL TCPWEGCNMA FKWPWARTEH LRVHTGDRPY VCHEPGCAQT  1260
FRFVSDFSRH KRKTGHSVNK KKKAKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G45290.1