PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G45580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 724aa MW: 75697.1 Da PI: 6.8768

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G45580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	534	630	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ++ OGLUM01G45580.1 534 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 624 79***********************999*******7777***99777777777777.******************..66688 PP E..EEE CS B3 90 felvvk 95 ++++++ OGLUM01G45580.1 625 GKYLIR 630 877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MDASAGSSAP HSHGNPGKQG GGGGRGKAPA AEIRGEAARD DVFFADDTFP LLPDFPCLSS 60 PSSSTFSSSS SSNSSSAFTT AAGGGCGGEP SEPASAADGF GELADIDQLL DLASLSVPWE 120 AEQPLFPDDV GMMIEDAMSG QPHQADDCTG DGDTKAVMEA AGGGDDAGDA CMEGSDAPDD 180 LPAFFMEWLT SNREYISADD LRSIRLRRST IEAAAARLGG GRQGTMQLLK LILTWVQNHH 240 LQKKRPRTAI DDGAASSDPQ LPSPGANPGY EFPSGGQEMG SAAATSWMPY QAFTPPAAYG 300 GDAMYPGAAG PFPFQQSCSK SSVVVSSQPF SPPTAAAAGD MHASGGGNMA WPQQFAPFPV 360 SSTSSYTMPS VVPPPFTAGF PGQYSGGHAM CSPRLAGVEP SSTKEARKKR MARQRRLSCL 420 QQQRSQQLNL SQIHISGHPQ EPSPRAAHSA PVTPSSAGCR SWGIWPPAAQ IIQNPLSNMS 480 NPPPSTSKQP KPSPEKPKPK PQAAATAGAE SLQRSTASEK RQAKTDKNLR FLLQKVLKQS 540 DVGSLGRIVL PKKEAEVHLP ELKTRDGVSI PMEDIGTSQV WNMRYRFWPN NKSRMYLLEN 600 TGDFVRSNEL QEGDFIVIYS DIKSGKYLIR GVKVRRAAQE QGNSSGAVGK HKHGSPEKPG 660 VSSNTKAAGG EDGTGGDDSA EAAAAAAAGK ADGGGCKGKS PHGVRRSRQE AAAAASMSQM 720 AVSI

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MDASAGSSAP HSHGNPGKQG GGGGRGKAPA AEIRGEAARD DVFFADDTFP LLPDFPCLSS  60
PSSSTFSSSS SSNSSSAFTT AAGGGCGGEP SEPASAADGF GELADIDQLL DLASLSVPWE  120
AEQPLFPDDV GMMIEDAMSG QPHQADDCTG DGDTKAVMEA AGGGDDAGDA CMEGSDAPDD  180
LPAFFMEWLT SNREYISADD LRSIRLRRST IEAAAARLGG GRQGTMQLLK LILTWVQNHH  240
LQKKRPRTAI DDGAASSDPQ LPSPGANPGY EFPSGGQEMG SAAATSWMPY QAFTPPAAYG  300
GDAMYPGAAG PFPFQQSCSK SSVVVSSQPF SPPTAAAAGD MHASGGGNMA WPQQFAPFPV  360
SSTSSYTMPS VVPPPFTAGF PGQYSGGHAM CSPRLAGVEP SSTKEARKKR MARQRRLSCL  420
QQQRSQQLNL SQIHISGHPQ EPSPRAAHSA PVTPSSAGCR SWGIWPPAAQ IIQNPLSNMS  480
NPPPSTSKQP KPSPEKPKPK PQAAATAGAE SLQRSTASEK RQAKTDKNLR FLLQKVLKQS  540
DVGSLGRIVL PKKEAEVHLP ELKTRDGVSI PMEDIGTSQV WNMRYRFWPN NKSRMYLLEN  600
TGDFVRSNEL QEGDFIVIYS DIKSGKYLIR GVKVRRAAQE QGNSSGAVGK HKHGSPEKPG  660
VSSNTKAAGG EDGTGGDDSA EAAAAAAAGK ADGGGCKGKS PHGVRRSRQE AAAAASMSQM  720
AVSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-60	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G45580.1