PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G45730.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 477aa MW: 50850.1 Da PI: 4.2799

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G45730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.9e-17	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r +t+ kR++g++KKA EL +LCd+ vav+ ++++g OGLUM01G45730.1 11 IANQQTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52 89**************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MARRKTSIAL IANQQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS 60 PEGGDAIERY RALPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM 120 SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADGGG RRRDADGTNS VGVHGYQHQE 180 VHAPATCDPF HPYNAGVTLM QPGYNNAQYM GGHGAVDMSG YQLQMQVPGN GSNNHSRLAW 240 GGFQPCNATF VQPVYGNLQC WDNNVVDGNG EPCDAIVPSA GDPYMDIAGN DVYGNQMQPA 300 PAANGGWHDP GTWGYDGGEP CKAIVPSSGD PYMGIGVYGN QMQPAPAPAA NGCWHNPAGT 360 WGNDGEPCNA IVPSAGHPYI DIECDIDGNY IDTTVFDYQT TSTSDNFMDA PVQFIATGSD 420 ESIVTNVAGC DETEFSIDDL LQCSDASQHS SGLEELHYLS DLADGFDFGC NFDVLLD

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MARRKTSIAL IANQQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGGDAIERY RALPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM  120
SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADGGG RRRDADGTNS VGVHGYQHQE  180
VHAPATCDPF HPYNAGVTLM QPGYNNAQYM GGHGAVDMSG YQLQMQVPGN GSNNHSRLAW  240
GGFQPCNATF VQPVYGNLQC WDNNVVDGNG EPCDAIVPSA GDPYMDIAGN DVYGNQMQPA  300
PAANGGWHDP GTWGYDGGEP CKAIVPSSGD PYMGIGVYGN QMQPAPAPAA NGCWHNPAGT  360
WGNDGEPCNA IVPSAGHPYI DIECDIDGNY IDTTVFDYQT TSTSDNFMDA PVQFIATGSD  420
ESIVTNVAGC DETEFSIDDL LQCSDASQHS SGLEELHYLS DLADGFDFGC NFDVLLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RRKTSIALIANQQTRATTYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	1e-17	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G45730.1