PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G45850.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 694aa MW: 73921.4 Da PI: 9.31

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G45850.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	408	455	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq OGLUM01G45850.1 408 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 455 79**********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MTEILSPTKT ILLADCSSKK AHAFNPRKGG GCKDLQQQQQ QLVLLFHSFT VPPLFLALSR 60 TRKAPAFTLS PLAFPHPRRS GIWWLLASRV SFAGLGRSWE LGNSGGLVGF RGELRQIFEM 120 NCGPPDQLPP ATAPSCFLNL NWDQSMDAAA GGHLDPALSS MVSSPASNST GALHGISPQP 180 HYGGGTPLSS PPKLNLSMMG QFHHYAAPPQ VGGGGGGGGG GGLPILENLM PMGHLDQFLA 240 DPGFAERAAR LSGFDARGGG GGGGYGGAGP AQFGLPDAGA AGASKEMELG NTRDESSVSD 300 PAPGGAEIPP KGASDGNARK RKASGKGKGK DSPMSTSAAK EDSSGKRCKS TEESNAAAEE 360 NSGKGKAAQS NSENGGGKKQ GKDSSSKPPE PPKDYIHVRA RRGEATDSHS LAERVRREKI 420 SQRMKLLQDL VPGCNKVVGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNNLPNL 480 LAKDMHQSCS PLQSSHFPLE TSGAPLPYIN QPQQGNPLGC GLTNGMDNQG SMHPLDPAFC 540 RPMGSHHPFL NGVSDAASQV GAFWQDDLQS VVQMDMGQGQ EIATSSNSYN VLEGSENKLN 600 FRICLSQKRV HMKIQDYLTA SPADFFSTIS MGIDNVMRYK KETALQQMRR SHGKKRGAKG 660 ETGTVHIHSH KQSIIKPCLR LLADNFYSRR DIQS

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MTEILSPTKT ILLADCSSKK AHAFNPRKGG GCKDLQQQQQ QLVLLFHSFT VPPLFLALSR  60
TRKAPAFTLS PLAFPHPRRS GIWWLLASRV SFAGLGRSWE LGNSGGLVGF RGELRQIFEM  120
NCGPPDQLPP ATAPSCFLNL NWDQSMDAAA GGHLDPALSS MVSSPASNST GALHGISPQP  180
HYGGGTPLSS PPKLNLSMMG QFHHYAAPPQ VGGGGGGGGG GGLPILENLM PMGHLDQFLA  240
DPGFAERAAR LSGFDARGGG GGGGYGGAGP AQFGLPDAGA AGASKEMELG NTRDESSVSD  300
PAPGGAEIPP KGASDGNARK RKASGKGKGK DSPMSTSAAK EDSSGKRCKS TEESNAAAEE  360
NSGKGKAAQS NSENGGGKKQ GKDSSSKPPE PPKDYIHVRA RRGEATDSHS LAERVRREKI  420
SQRMKLLQDL VPGCNKVVGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNNLPNL  480
LAKDMHQSCS PLQSSHFPLE TSGAPLPYIN QPQQGNPLGC GLTNGMDNQG SMHPLDPAFC  540
RPMGSHHPFL NGVSDAASQV GAFWQDDLQS VVQMDMGQGQ EIATSSNSYN VLEGSENKLN  600
FRICLSQKRV HMKIQDYLTA SPADFFSTIS MGIDNVMRYK KETALQQMRR SHGKKRGAKG  660
ETGTVHIHSH KQSIIKPCLR LLADNFYSRR DIQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G45850.1