PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46130.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 1267aa MW: 140786 Da PI: 7.7124

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.3e-18	1168	1223	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rk+ ++++eql++Le+++e ++++++ ++ LA+kl+++ rqV vWFqNrRa+ k+ OGLUM01G46130.1 1168 RKKLRLSEEQLTVLENMYEAGSNLDQALKQGLAEKLNIKPRQVEVWFQNRRARTKH 1223 677889***********************************************995 PP
2	HD-ZIP_I/II	93.6	2.1e-30	1168	1252	1	85
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk+rls+eq+++LE+++e+ ++L++ K+ la++L+++prqv+vWFqnrRARtk kq+E++++ Lkr+++ l++en+rL+ e OGLUM01G46130.1 1168 RKKLRLSEEQLTVLENMYEAGSNLDQALKQGLAEKLNIKPRQVEVWFQNRRARTKHKQIEEECKNLKRWLEGLNKENRRLKMELM 1252 69*******************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1267 aa Download sequence
MAGNEWINGY LEAILDSGGA AGGGGGGGGG GGGGGGGGGG GGGGGGDPRS PAAGAASPRG 60 PHMNFNPTHY FVEEVVKGVD ESDLHRTWIK VVATRNARER STRLENMCWR IWHLARKKKQ 120 ACIDLSLSFS FFLVFMLELE GILRISARRK EQEQVRRETS EDLAEDLFEG EKADTVGELA 180 QQDTPMKKKF QRNFSELTVS WSDENKEKKL YIVLISLHGL VRGDNMELGR DSDTGGQVKY 240 VVELARALAT MPGVYRVDLF TRQVSSPEVD WSYGEPTEML TSGSTDGEGS GESAGAYIVR 300 IPCGPRDKYL RKEALWPYLQ EFVDGALAHI LNMSKALGEQ VSNGKVVLPY VIHGHYADAG 360 DVAALLSGAL NVPMVLTGHS LGRNKLEQIM KQGRMSKEEI DSTYKIMRRI EGEELALDAA 420 ELVITSTRQE IDEQWGLYDG FDVKLEKVLR ARARRGVSCH GRFMPRMVVI PPGMDFSSVV 480 VPEDTSDGDD GKDFEIASPR SLPPIWAEVM RFLTNPHKPM ILALSRPDPK KNITTLVKAF 540 GECRPLRELA NLILIMGNRD DIDEMSAGNA SVLTTVLKLI DKYDLYGSVA FPKHHKQSDV 600 PEIYRLTGKM KGVFINPALV EPFGLTLIEA AAHGLPIVAT KNGGPALNNG LLVDPHDQHA 660 IADALLKLVA DKNLWQECRK NGLRNIQLYS WPEHCRTYLT RIAGCRIRNP RWLMDTPADA 720 AAEEEALEDS LMDVQDLSLR LSIDGERGSS MNDAPSSDPQ DSVQRIMNKI KRSSPADTDG 780 AKIPAEAAAT ATATATSGAM NKYPLLRRRR RLFVIAVDCY GDDGSASKRM LQVIQEVFRA 840 VRSDSQMSRI SGFALSTAMP LPETLKLLQL GKIPPTDFDA LICGSGSEVY YPGTAQCVDA 900 GGRLRPDQDY LLHINHRWSH DGAKQTIAKL AHDGSGTNVE PDVESCNPHC VSFFIKDPNK 960 VRTIDEMRER MRMRGLRCHL MYCRNATRLQ VVPLLASRSQ ALRYLFVRWG LSVGNMYLIV 1020 GEHGDTDHEE MLSGLHKTVI IRGVTEKGSE QLVRSSGSYQ REDVVPSESP LIAFTKGDLK 1080 ADEIMRALKE VTKAASGMDW QRPLCKTAYW FQSRVYTNME EKEEMTMLSL GVGAASKHSI 1140 SNRKFRLKEV TDHKFNLGDQ DHNSGHVRKK LRLSEEQLTV LENMYEAGSN LDQALKQGLA 1200 EKLNIKPRQV EVWFQNRRAR TKHKQIEEEC KNLKRWLEGL NKENRRLKME LMRNAQKDCI 1260 KKGIQQS

Sequence ? help Back to Top

Protein Sequence Length: 1267 aa Download sequence

MAGNEWINGY LEAILDSGGA AGGGGGGGGG GGGGGGGGGG GGGGGGDPRS PAAGAASPRG  60
PHMNFNPTHY FVEEVVKGVD ESDLHRTWIK VVATRNARER STRLENMCWR IWHLARKKKQ  120
ACIDLSLSFS FFLVFMLELE GILRISARRK EQEQVRRETS EDLAEDLFEG EKADTVGELA  180
QQDTPMKKKF QRNFSELTVS WSDENKEKKL YIVLISLHGL VRGDNMELGR DSDTGGQVKY  240
VVELARALAT MPGVYRVDLF TRQVSSPEVD WSYGEPTEML TSGSTDGEGS GESAGAYIVR  300
IPCGPRDKYL RKEALWPYLQ EFVDGALAHI LNMSKALGEQ VSNGKVVLPY VIHGHYADAG  360
DVAALLSGAL NVPMVLTGHS LGRNKLEQIM KQGRMSKEEI DSTYKIMRRI EGEELALDAA  420
ELVITSTRQE IDEQWGLYDG FDVKLEKVLR ARARRGVSCH GRFMPRMVVI PPGMDFSSVV  480
VPEDTSDGDD GKDFEIASPR SLPPIWAEVM RFLTNPHKPM ILALSRPDPK KNITTLVKAF  540
GECRPLRELA NLILIMGNRD DIDEMSAGNA SVLTTVLKLI DKYDLYGSVA FPKHHKQSDV  600
PEIYRLTGKM KGVFINPALV EPFGLTLIEA AAHGLPIVAT KNGGPALNNG LLVDPHDQHA  660
IADALLKLVA DKNLWQECRK NGLRNIQLYS WPEHCRTYLT RIAGCRIRNP RWLMDTPADA  720
AAEEEALEDS LMDVQDLSLR LSIDGERGSS MNDAPSSDPQ DSVQRIMNKI KRSSPADTDG  780
AKIPAEAAAT ATATATSGAM NKYPLLRRRR RLFVIAVDCY GDDGSASKRM LQVIQEVFRA  840
VRSDSQMSRI SGFALSTAMP LPETLKLLQL GKIPPTDFDA LICGSGSEVY YPGTAQCVDA  900
GGRLRPDQDY LLHINHRWSH DGAKQTIAKL AHDGSGTNVE PDVESCNPHC VSFFIKDPNK  960
VRTIDEMRER MRMRGLRCHL MYCRNATRLQ VVPLLASRSQ ALRYLFVRWG LSVGNMYLIV  1020
GEHGDTDHEE MLSGLHKTVI IRGVTEKGSE QLVRSSGSYQ REDVVPSESP LIAFTKGDLK  1080
ADEIMRALKE VTKAASGMDW QRPLCKTAYW FQSRVYTNME EKEEMTMLSL GVGAASKHSI  1140
SNRKFRLKEV TDHKFNLGDQ DHNSGHVRKK LRLSEEQLTV LENMYEAGSN LDQALKQGLA  1200
EKLNIKPRQV EVWFQNRRAR TKHKQIEEEC KNLKRWLEGL NKENRRLKME LMRNAQKDCI  1260
KKGIQQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	806	812	LRRRRRL
2	1217	1225	RRARTKHKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-25	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G46130.1