PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G46440.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22583.1 Da    PI: 10.2413
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G46440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-251160251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+k  rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  OGLUM01G46440.1 11 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60
                     8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MARRGRVQLR RIEDKASRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS  60
SSIEGTYDRY QQFSGARRDL NEGSTSINSD ENASIHSRLR DITAWSLQNN ADESDANQLE  120
KLEKLLTNAL RDTKSKKGTT GRSIIDAEIG VLHSKALREN STSTEGRETG PPLRSAVLML  180
AKQNGEGSRS RANSSGSRGQ EEGSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.14e-30MIKC_MADS family protein